This class is an helper for the communication of vector_dist. More...
This class is an helper for the communication of vector_dist.
| dim | Dimensionality of the space where the elements lives |
| St | type of space float, double ... |
| prop | properties the vector element store in OpenFPM data structure format |
| Decomposition | Decomposition strategy to use CartDecomposition ... |
| Memory | Memory pool where store the information HeapMemory ... |
Definition at line 346 of file vector_dist_comm.hpp.
#include <vector_dist_comm.hpp>
Inheritance diagram for vector_dist_comm< dim, St, prop, Decomposition, Memory, layout_base >:Data Structures | |
| struct | proc_with_prp |
| process the particle with properties More... | |
| struct | set_mem_retained_buffers |
| struct | set_mem_retained_buffers< true, send_vector, v_mpl > |
| struct | set_mem_retained_buffers_inte |
| Set the buffer for each property. More... | |
Public Member Functions | |
| vector_dist_comm (const vector_dist_comm< dim, St, prop, Decomposition, Memory, layout_base > &v) | |
| Copy Constructor. | |
| vector_dist_comm (const Decomposition &dec) | |
| Constructor. | |
| vector_dist_comm (Decomposition &&dec) | |
| Constructor. | |
| vector_dist_comm () | |
| Constructor. | |
| ~vector_dist_comm () | |
| Destructor. | |
| size_t | getDecompositionGranularity () |
| Get the number of minimum sub-domain per processor. | |
| void | setDecompositionGranularity (size_t n_sub) |
| Set the minimum number of sub-domain per processor. | |
| void | init_decomposition (Box< dim, St > &box, const size_t(&bc)[dim], const Ghost< dim, St > &g, size_t opt, const grid_sm< dim, void > &gdist) |
| Initialize the decomposition. | |
| void | init_decomposition_gr_cell (Box< dim, St > &box, const size_t(&bc)[dim], const Ghost< dim, St > &g, size_t opt, const grid_sm< dim, void > &gdist) |
| Initialize the decomposition. | |
| template<unsigned int impl, int ... prp> | |
| void | ghost_get_ (openfpm::vector< Point< dim, St >, Memory, layout_base > &v_pos, openfpm::vector< prop, Memory, layout_base > &v_prp, size_t &g_m, size_t opt=WITH_POSITION) |
| It synchronize the properties and position of the ghost particles. | |
| template<int ... prp> | |
| void | ghost_wait_ (openfpm::vector< Point< dim, St >, Memory, layout_base > &v_pos, openfpm::vector< prop, Memory, layout_base > &v_prp, size_t &g_m, size_t opt=WITH_POSITION) |
| It synchronize the properties and position of the ghost particles. | |
| template<unsigned int ... prp> | |
| void | map_list_ (openfpm::vector< Point< dim, St > > &v_pos, openfpm::vector< prop > &v_prp, size_t &g_m, size_t opt) |
| It move all the particles that does not belong to the local processor to the respective processor. | |
| template<typename obp = KillParticle> | |
| void | map_ (openfpm::vector< Point< dim, St >, Memory, layout_base > &v_pos, openfpm::vector< prop, Memory, layout_base > &v_prp, size_t &g_m, size_t opt) |
| It move all the particles that does not belong to the local processor to the respective processor. | |
| Decomposition & | getDecomposition () |
| Get the decomposition. | |
| const Decomposition & | getDecomposition () const |
| Get the decomposition. | |
| vector_dist_comm< dim, St, prop, Decomposition, Memory, layout_base > & | operator= (const vector_dist_comm< dim, St, prop, Decomposition, Memory, layout_base > &vc) |
| Copy a vector. | |
| vector_dist_comm< dim, St, prop, Decomposition, Memory, layout_base > & | operator= (vector_dist_comm< dim, St, prop, Decomposition, Memory, layout_base > &&vc) |
| Copy a vector. | |
| template<template< typename, typename > class op, int ... prp> | |
| void | ghost_put_ (openfpm::vector< Point< dim, St >, Memory, layout_base > &v_pos, openfpm::vector< prop, Memory, layout_base > &v_prp, size_t &g_m, size_t opt) |
| Ghost put. | |
Private Types | |
| typedef openfpm::vector< Point< dim, St >, Memory, layout_base, openfpm::grow_policy_identity > | send_pos_vector |
| definition of the send vector for position | |
Private Member Functions | |
| size_t | get_last_ghost_get_received_parts (size_t i) |
| Get the number of particles received from each processor during the last ghost_get. | |
| size_t | get_last_ghost_get_num_proc () |
| Get the number of processor involved during the last ghost_get. | |
| openfpm::vector< size_t > & | get_last_ghost_get_num_proc_vector () |
| Get the number of processor involved during the last ghost_get. | |
| void | calc_send_buffers (openfpm::vector< aggregate< unsigned int, unsigned int >, Memory, layout_base > &prc_sz, openfpm::vector< size_t > &prc_sz_r, openfpm::vector< size_t > &prc_r, size_t opt) |
| Calculate sending buffer size for each processor. | |
| void | createShiftBox () |
| For every internal ghost box we create a structure that order such internal local ghost box in shift vectors. | |
| void | local_ghost_from_opart (openfpm::vector< Point< dim, St >, Memory, layout_base > &v_pos, openfpm::vector< prop, Memory, layout_base > &v_prp, size_t opt) |
| Local ghost from labeled particles. | |
| void | local_ghost_from_dec (openfpm::vector< Point< dim, St >, Memory, layout_base > &v_pos, openfpm::vector< prop, Memory, layout_base > &v_prp, size_t g_m, size_t opt) |
| Local ghost from decomposition. | |
| void | add_loc_particles_bc (openfpm::vector< Point< dim, St >, Memory, layout_base > &v_pos, openfpm::vector< prop, Memory, layout_base > &v_prp, size_t &g_m, size_t opt) |
| Add local particles based on the boundary conditions. | |
| void | fill_send_ghost_pos_buf (openfpm::vector< Point< dim, St >, Memory, layout_base > &v_pos, openfpm::vector< size_t > &prc_sz, openfpm::vector< send_pos_vector > &g_pos_send, size_t opt, bool async) |
| This function fill the send buffer for the particle position after the particles has been label with labelParticles. | |
| template<typename send_vector , typename prp_object , int ... prp> | |
| void | fill_send_ghost_put_prp_buf (openfpm::vector< prop, Memory, layout_base > &v_prp, openfpm::vector< send_vector > &g_send_prp, size_t &g_m, size_t opt) |
| This function fill the send buffer for ghost_put. | |
| void | resize_retained_buffer (openfpm::vector_fr< Memory > &rt_buf, size_t nbf) |
| resize the retained buffer by nbf | |
| template<typename send_vector , typename prp_object , int ... prp> | |
| void | fill_send_ghost_prp_buf (openfpm::vector< prop, Memory, layout_base > &v_prp, openfpm::vector< size_t > &prc_sz, openfpm::vector< send_vector > &g_send_prp, size_t opt) |
| This function fill the send buffer for properties after the particles has been label with labelParticles. | |
| void | fill_send_map_buf (openfpm::vector< Point< dim, St >, Memory, layout_base > &v_pos, openfpm::vector< prop, Memory, layout_base > &v_prp, openfpm::vector< size_t > &prc_sz_r, openfpm::vector< size_t > &prc_r, openfpm::vector< openfpm::vector< Point< dim, St >, Memory, layout_base, openfpm::grow_policy_identity > > &m_pos, openfpm::vector< openfpm::vector< prop, Memory, layout_base, openfpm::grow_policy_identity > > &m_prp, openfpm::vector< aggregate< unsigned int, unsigned int >, Memory, layout_base > &prc_sz, size_t opt) |
| allocate and fill the send buffer for the map function | |
| template<typename prp_object , int ... prp> | |
| void | fill_send_map_buf_list (openfpm::vector< Point< dim, St > > &v_pos, openfpm::vector< prop, Memory, layout_base > &v_prp, openfpm::vector< size_t > &prc_sz_r, openfpm::vector< openfpm::vector< Point< dim, St > > > &m_pos, openfpm::vector< openfpm::vector< prp_object > > &m_prp) |
| allocate and fill the send buffer for the map function | |
| template<typename obp > | |
| void | labelParticleProcessor (openfpm::vector< Point< dim, St >, Memory, layout_base > &v_pos, openfpm::vector< aggregate< int, int, int >, Memory, layout_base > &lbl_p, openfpm::vector< aggregate< unsigned int, unsigned int >, Memory, layout_base > &prc_sz, size_t opt) |
| Label particles for mappings. | |
| void | labelParticlesGhost (openfpm::vector< Point< dim, St >, Memory, layout_base > &v_pos, openfpm::vector< prop, Memory, layout_base > &v_prp, openfpm::vector< size_t > &prc, openfpm::vector< size_t > &prc_sz, openfpm::vector< aggregate< unsigned int, unsigned int >, Memory, layout_base > &prc_offset, size_t &g_m, size_t opt) |
| Label the particles. | |
Static Private Member Functions | |
| static void * | message_alloc_map (size_t msg_i, size_t total_msg, size_t total_p, size_t i, size_t ri, void *ptr) |
| Call-back to allocate buffer to receive incoming elements (particles) | |
Private Attributes | |
| size_t | v_sub_unit_factor = 64 |
| Number of units for each sub-domain. | |
| Vcluster< Memory > & | v_cl |
| VCluster. | |
| Decomposition | dec |
| Domain decomposition. | |
| openfpm::vector< size_t > | p_map_req |
| It map the processor id with the communication request into map procedure. | |
| openfpm::vector< aggregate< int, int, int >, Memory, layout_base > | m_opart |
| openfpm::vector< openfpm::vector< aggregate< size_t, size_t > > > | g_opart |
| openfpm::vector< aggregate< unsigned int, unsigned long int >, CudaMemory, memory_traits_inte > | g_opart_device |
| Same as g_opart but on device, the vector of vector is flatten into a single vector. | |
| openfpm::vector< Point< dim, St >, Memory, layout_base > | v_pos_tmp |
| Helper buffer for computation (on GPU) of local particles (position) | |
| openfpm::vector< prop, Memory, layout_base > | v_prp_tmp |
| Helper buffer for computation (on GPU) of local particles (properties) | |
| openfpm::vector< size_t > | g_opart_sz |
| Per processor number of particle g_opart_sz.get(i) = g_opart.get(i).size() | |
| openfpm::vector< size_t > | prc_g_opart |
| processor rank list of g_opart | |
| openfpm::vector< size_t > | prc_recv_get_pos |
| openfpm::vector< size_t > | prc_recv_get_prp |
| openfpm::vector< size_t > | prc_recv_put |
| the same as prc_recv_get but for put | |
| openfpm::vector< size_t > | prc_recv_map |
| the same as prc_recv_get but for map | |
| openfpm::vector< size_t > | recv_sz_get_pos |
| openfpm::vector< size_t > | recv_sz_get_prp |
| openfpm::vector< size_t > | recv_sz_get_byte |
| Conversion to byte of recv_sz_get. | |
| openfpm::vector< size_t > | recv_sz_put |
| The same as recv_sz_get but for put. | |
| openfpm::vector< size_t > | recv_sz_map |
| The same as recv_sz_get but for map. | |
| openfpm::vector< size_t > | prc_sz_gg |
| elements sent for each processors (ghost_get) | |
| openfpm::vector< aggregate< unsigned int >, Memory, layout_base > | proc_id_out |
| temporary buffer to processors ids | |
| openfpm::vector< aggregate< unsigned int >, Memory, layout_base > | starts |
| temporary buffer for the scan result | |
| openfpm::vector< aggregate< unsigned int, unsigned int >, Memory, layout_base > | prc_offset |
| Processor communication size. | |
| CudaMemory | mem |
| Temporary CudaMemory to do stuff. | |
| size_t | lg_m |
| openfpm::vector_fr< Memory > | hsmem |
| Sending buffer. | |
| long int | shift_box_ndec = -1 |
| From which decomposition the shift boxes are calculated. | |
| std::unordered_map< size_t, size_t > | map_cmb |
| this map is used to check if a combination is already present | |
| openfpm::vector_std< openfpm::vector_std< Box< dim, St > > > | box_f |
| openfpm::vector< Box< dim, St >, Memory, layout_base > | box_f_dev |
| The boxes touching the border of the domain + shift vector linearized from where they come from. | |
| openfpm::vector< aggregate< unsigned int >, Memory, layout_base > | box_f_sv |
| openfpm::vector_std< comb< dim > > | box_cmb |
| Store the sector for each group (previous vector) | |
| openfpm::vector< aggregate< unsigned int, unsigned int >, Memory, layout_base > | o_part_loc |
| Id of the local particle to replicate for ghost_get. | |
| openfpm::vector< aggregate< unsigned int, unsigned int >, Memory, layout_base > | prc_sz |
| Processor communication size. | |
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definition of the send vector for position
Definition at line 352 of file vector_dist_comm.hpp.
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Constructor.
| dec | Domain decompositon |
Definition at line 1641 of file vector_dist_comm.hpp.
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Constructor.
| dec | Domain decompositon |
Definition at line 1652 of file vector_dist_comm.hpp.
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Constructor.
Definition at line 1661 of file vector_dist_comm.hpp.
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Add local particles based on the boundary conditions.
In order to understand what this function use the following
[1,1]
+---------+------------------------+---------+
| (1,-1) | | (1,1) |
| | | (1,0) --> 7 | | |
| v | | v |
| 6 | | 8 |
+--------------------------------------------+
| | | |
| | | |
| | | |
| (-1,0) | | (1,0) |
| | | | | |
| v | (0,0) --> 4 | v |
| 3 | | 5 |
| | | |
B | | | A |
* | | | * |
| | | |
| | | |
| | | |
+--------------------------------------------+
| (-1,-1) | | (-1,1) |
| | | (-1,0) --> 1 | | |
| v | | v |
| 0 | | 2 |
+---------+------------------------+---------+The box is the domain, while all boxes at the border (so not (0,0) ) are the ghost part at the border of the domain. If a particle A is in the position in figure a particle B must be created. This function duplicate the particle A, if A and B are local \param v_pos vector of particle of positions \param v_prp vector of particle properties \param g_m ghost marker \param opt options
Definition at line 845 of file vector_dist_comm.hpp.
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Calculate sending buffer size for each processor.
| prc_sz_r | processor size |
| prc_r | processor ids |
Definition at line 509 of file vector_dist_comm.hpp.
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For every internal ghost box we create a structure that order such internal local ghost box in shift vectors.
Definition at line 588 of file vector_dist_comm.hpp.
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This function fill the send buffer for the particle position after the particles has been label with labelParticles.
| v_pos | vector of particle positions |
| g_pos_send | Send buffer to fill |
Definition at line 873 of file vector_dist_comm.hpp.
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This function fill the send buffer for properties after the particles has been label with labelParticles.
| send_vector | type used to send data |
| prp_object | object containing only the properties to send |
| prp | set of properties to send |
| v_prp | vector of particle properties |
| g_send_prp | Send buffer to fill |
Definition at line 1151 of file vector_dist_comm.hpp.
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This function fill the send buffer for ghost_put.
| send_vector | type used to send data |
| prp_object | object containing only the properties to send |
| prp | set of properties to send |
| v_prp | vector of particle properties |
| g_send_prp | Send buffer to fill |
| g_m | ghost marker |
Definition at line 962 of file vector_dist_comm.hpp.
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allocate and fill the send buffer for the map function
| v_pos | vector of particle positions |
| v_prp | vector of particles properties |
| prc_sz_r | For each processor in the list the size of the message to send |
| m_pos | sending buffer for position |
| m_prp | sending buffer for properties |
| offset | from where start the list of the particles that migrate in o_part This parameter is used only in case of RUN_ON_DEVICE option |
Definition at line 1242 of file vector_dist_comm.hpp.
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allocate and fill the send buffer for the map function
| prp_object | object type to send |
| prp | properties to send |
| v_pos | vector of particle positions |
| v_prp | vector of particle properties |
| prc_sz_r | number of particles to send for each processor |
| m_pos | sending buffer for position |
| m_prp | sending buffer for properties |
Definition at line 1356 of file vector_dist_comm.hpp.
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Get the number of processor involved during the last ghost_get.
Definition at line 483 of file vector_dist_comm.hpp.
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Get the number of processor involved during the last ghost_get.
Definition at line 495 of file vector_dist_comm.hpp.
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Get the number of particles received from each processor during the last ghost_get.
| i | processor (list index) |
Definition at line 469 of file vector_dist_comm.hpp.
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Get the number of minimum sub-domain per processor.
Definition at line 1688 of file vector_dist_comm.hpp.
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It synchronize the properties and position of the ghost particles.
| prp | list of properties to get synchronize |
| opt | options WITH_POSITION, it send also the positional information of the particles |
| v_pos | vector of position to update |
| v_prp | vector of properties to update |
| g_m | marker between real and ghost particles |
Definition at line 1778 of file vector_dist_comm.hpp.
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Ghost put.
| op | operation to apply |
| prp | set of properties |
| v_pos | vector of particle positions |
| v_prp | vector od particle properties |
| g_m | ghost marker |
| opt | options |
Definition at line 2100 of file vector_dist_comm.hpp.
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It synchronize the properties and position of the ghost particles.
| prp | list of properties to get synchronize |
| opt | options WITH_POSITION, it send also the positional information of the particles |
| v_pos | vector of position to update |
| v_prp | vector of properties to update |
| g_m | marker between real and ghost particles |
Definition at line 1865 of file vector_dist_comm.hpp.
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Initialize the decomposition.
| box | domain |
| bc | boundary conditions |
| g | ghost extension |
| opt | additional options |
Definition at line 1711 of file vector_dist_comm.hpp.
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Initialize the decomposition.
| box | domain |
| bc | boundary conditions |
| g | ghost extension |
| opt | additional options |
Definition at line 1751 of file vector_dist_comm.hpp.
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Label particles for mappings.
| v_pos | vector of particle positions |
| lbl_p | Particle labeled |
| prc_sz | For each processor the number of particles to send |
| opt | options |
Definition at line 1398 of file vector_dist_comm.hpp.
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Label the particles.
It count the number of particle to send to each processors and save its ids
| v_pos | vector of particle positions |
| v_prp | vector of particle properties |
| prc | for each particle it label the processor id (the owner of the particle, or where it should go the particle) |
| g_m | ghost marker |
| opt | ghost_get options |
Definition at line 1530 of file vector_dist_comm.hpp.
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Local ghost from decomposition.
| v_pos | vector of particle positions |
| v_prp | vector of particle properties |
| g_m | ghost marker |
Definition at line 734 of file vector_dist_comm.hpp.
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Local ghost from labeled particles.
| v_pos | vector of particle positions |
| v_prp | vector of particles properties |
| opt | options |
Definition at line 677 of file vector_dist_comm.hpp.
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It move all the particles that does not belong to the local processor to the respective processor.
| out | of bound policy it specify what to do when the particles are detected out of bound |
In general this function is called after moving the particles to move the elements out the local processor. Or just after initialization if each processor contain non local particles
| v_pos | vector of particle positions |
| v_prp | vector of particle properties |
| g_m | ghost marker |
position vector
properties vector
Definition at line 1982 of file vector_dist_comm.hpp.
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It move all the particles that does not belong to the local processor to the respective processor.
| out | of bound policy it specify what to do when the particles are detected out of bound |
In general this function is called after moving the particles to move the elements out the local processor. Or just after initialization if each processor contain non local particles
| prp | properties to communicate |
| v_pos | vector of particle positions |
| v_prp | vector of particle properties |
| g_m | ghost marker |
| opt | options |
position vector
properties vector
Definition at line 1905 of file vector_dist_comm.hpp.
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Call-back to allocate buffer to receive incoming elements (particles)
| msg_i | size required to receive the message from i |
| total_msg | total size to receive from all the processors |
| total_p | the total number of processor that want to communicate with you |
| i | processor id |
| ri | request id (it is an id that goes from 0 to total_p, and is unique every time message_alloc is called) |
| ptr | a pointer to the vector_dist structure |
Definition at line 1611 of file vector_dist_comm.hpp.
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Copy a vector.
| vc | vector to copy |
Definition at line 2067 of file vector_dist_comm.hpp.
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Copy a vector.
| vc | vector to copy |
Definition at line 2081 of file vector_dist_comm.hpp.
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resize the retained buffer by nbf
Definition at line 1056 of file vector_dist_comm.hpp.
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Set the minimum number of sub-domain per processor.
| n_sub |
Definition at line 1698 of file vector_dist_comm.hpp.
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Store the sector for each group (previous vector)
Definition at line 576 of file vector_dist_comm.hpp.
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The boxes touching the border of the domain are divided in groups (first vector) each group contain internal ghost coming from sub-domains of the same section
Definition at line 569 of file vector_dist_comm.hpp.
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The boxes touching the border of the domain + shift vector linearized from where they come from.
Definition at line 572 of file vector_dist_comm.hpp.
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Definition at line 573 of file vector_dist_comm.hpp.
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Domain decomposition.
Definition at line 358 of file vector_dist_comm.hpp.
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Per processor ordered particles id for ghost_get (see prc_g_opart) For each processor the internal vector store the id of the particles that must be communicated to the other processors
Definition at line 375 of file vector_dist_comm.hpp.
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Same as g_opart but on device, the vector of vector is flatten into a single vector.
Definition at line 380 of file vector_dist_comm.hpp.
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Per processor number of particle g_opart_sz.get(i) = g_opart.get(i).size()
Definition at line 389 of file vector_dist_comm.hpp.
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Sending buffer.
Definition at line 444 of file vector_dist_comm.hpp.
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Local ghost marker (across the ghost particles it mark from where we have the) replicated ghost particles that are local
Definition at line 441 of file vector_dist_comm.hpp.
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For each near processor, outgoing particle id
Definition at line 370 of file vector_dist_comm.hpp.
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this map is used to check if a combination is already present
Definition at line 565 of file vector_dist_comm.hpp.
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Temporary CudaMemory to do stuff.
Definition at line 437 of file vector_dist_comm.hpp.
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Id of the local particle to replicate for ghost_get.
Definition at line 579 of file vector_dist_comm.hpp.
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It map the processor id with the communication request into map procedure.
Definition at line 361 of file vector_dist_comm.hpp.
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processor rank list of g_opart
Definition at line 392 of file vector_dist_comm.hpp.
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Processor communication size.
Definition at line 433 of file vector_dist_comm.hpp.
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It store the list of processor that communicate with us (local processor) from the last ghost get
Definition at line 396 of file vector_dist_comm.hpp.
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Definition at line 397 of file vector_dist_comm.hpp.
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the same as prc_recv_get but for map
Definition at line 403 of file vector_dist_comm.hpp.
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the same as prc_recv_get but for put
Definition at line 400 of file vector_dist_comm.hpp.
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Processor communication size.
Definition at line 582 of file vector_dist_comm.hpp.
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elements sent for each processors (ghost_get)
Definition at line 420 of file vector_dist_comm.hpp.
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temporary buffer to processors ids
Definition at line 425 of file vector_dist_comm.hpp.
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Conversion to byte of recv_sz_get.
Definition at line 410 of file vector_dist_comm.hpp.
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It store the size of the elements added for each processor that communicate with us (local processor) from the last ghost get
Definition at line 407 of file vector_dist_comm.hpp.
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Definition at line 408 of file vector_dist_comm.hpp.
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The same as recv_sz_get but for map.
Definition at line 417 of file vector_dist_comm.hpp.
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The same as recv_sz_get but for put.
Definition at line 414 of file vector_dist_comm.hpp.
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From which decomposition the shift boxes are calculated.
Definition at line 562 of file vector_dist_comm.hpp.
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temporary buffer for the scan result
Definition at line 430 of file vector_dist_comm.hpp.
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VCluster.
Definition at line 355 of file vector_dist_comm.hpp.
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Helper buffer for computation (on GPU) of local particles (position)
Definition at line 383 of file vector_dist_comm.hpp.
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Helper buffer for computation (on GPU) of local particles (properties)
Definition at line 386 of file vector_dist_comm.hpp.
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Number of units for each sub-domain.
Definition at line 349 of file vector_dist_comm.hpp.