main.cpp

//#define SE_CLASS1
//#define STOP_ON_ERROR

#include "Vector/vector_dist.hpp"
#include <math.h>
#include "Draw/DrawParticles.hpp"

// A constant to indicate boundary particles
#define BOUNDARY 0

// A constant to indicate fluid particles
#define FLUID 1

// initial spacing between particles dp in the formulas
const double dp = 0.0085;
// Maximum height of the fluid water
// is going to be calculated and filled later on
double h_swl = 0.0;

// c_s in the formulas (constant used to calculate the sound speed)
const double coeff_sound = 20.0;

// gamma in the formulas
const double gamma_ = 7.0;

// sqrt(3.0*dp*dp) support of the kernel
const double H = 0.0147224318643;

// Eta in the formulas
const double Eta2 = 0.01 * H*H;

// alpha in the formula
const double visco = 0.1;

// cbar in the formula (calculated later)
double cbar = 0.0;

// Mass of the fluid particles
const double MassFluid = 0.000614125;

// Mass of the boundary particles
const double MassBound = 0.000614125;

// End simulation time
#ifdef TEST_RUN
const double t_end = 0.001;
#else
const double t_end = 1.5;
#endif

// Gravity acceleration
const double gravity = 9.81;

// Reference densitu 1000Kg/m^3
const double rho_zero = 1000.0;

// Filled later require h_swl, it is b in the formulas
double B = 0.0;

// Constant used to define time integration
const double CFLnumber = 0.2;

// Minimum T
const double DtMin = 0.00001;

// Minimum Rho allowed
const double RhoMin = 700.0;

// Maximum Rho allowed
const double RhoMax = 1300.0;

// Filled in initialization
double max_fluid_height = 0.0;

// Properties

// FLUID or BOUNDARY
const size_t type = 0;

// Density
const int rho = 1;

// Density at step n-1
const int rho_prev = 2;

// Pressure
const int Pressure = 3;

// Delta rho calculated in the force calculation
const int drho = 4;

// calculated force
const int force = 5;

// velocity
const int velocity = 6;

// velocity at previous step
const int velocity_prev = 7;

// Type of the vector containing particles
typedef vector_dist<3,double,aggregate<size_t,double,  double,    double,     double,     double[3], double[3], double[3]>> particles;
//                                       |      |        |          |            |            |         |            |
//                                       |      |        |          |            |            |         |            |
//                                     type   density   density    Pressure    delta       force     velocity    velocity
//                                                      at n-1                 density                           at n - 1

struct ModelCustom
{
    template<typename Decomposition, typename vector> inline void addComputation(Decomposition & dec,
                                                                                 vector & vd,
                                                                                 size_t v,
                                                                                 size_t p)
    {
        if (vd.template getProp<type>(p) == FLUID)
            dec.addComputationCost(v,4);
        else
            dec.addComputationCost(v,3);
    }

    template<typename Decomposition> inline void applyModel(Decomposition & dec, size_t v)
    {
        dec.setSubSubDomainComputationCost(v, dec.getSubSubDomainComputationCost(v) * dec.getSubSubDomainComputationCost(v));
    }

    double distributionTol()
    {
        return 1.01;
    }
};

inline void EqState(particles & vd)
{
    auto it = vd.getDomainIterator();

    while (it.isNext())
    {
        auto a = it.get();

        double rho_a = vd.template getProp<rho>(a);
        double rho_frac = rho_a / rho_zero;

        vd.template getProp<Pressure>(a) = B*( rho_frac*rho_frac*rho_frac*rho_frac*rho_frac*rho_frac*rho_frac - 1.0);

        ++it;
    }
}

const double a2 = 1.0/M_PI/H/H/H;

inline double Wab(double r)
{
    r /= H;

    if (r < 1.0)
        return (1.0 - 3.0/2.0*r*r + 3.0/4.0*r*r*r)*a2;
    else if (r < 2.0)
        return (1.0/4.0*(2.0 - r*r)*(2.0 - r*r)*(2.0 - r*r))*a2;
    else
        return 0.0;
}

const double c1 = -3.0/M_PI/H/H/H/H;
const double d1 = 9.0/4.0/M_PI/H/H/H/H;
const double c2 = -3.0/4.0/M_PI/H/H/H/H;
const double a2_4 = 0.25*a2;
// Filled later
double W_dap = 0.0;

inline void DWab(Point<3,double> & dx, Point<3,double> & DW, double r, bool print)
{
    const double qq=r/H;

    double qq2 = qq * qq;
    double fac1 = (c1*qq + d1*qq2)/r;
    double b1 = (qq < 1.0)?1.0f:0.0f;

    double wqq = (2.0 - qq);
    double fac2 = c2 * wqq * wqq / r;
    double b2 = (qq >= 1.0 && qq < 2.0)?1.0f:0.0f;

    double factor = (b1*fac1 + b2*fac2);

    DW.get(0) = factor * dx.get(0);
    DW.get(1) = factor * dx.get(1);
    DW.get(2) = factor * dx.get(2);
}

// Tensile correction
inline double Tensile(double r, double rhoa, double rhob, double prs1, double prs2)
{
    const double qq=r/H;
    //-Cubic Spline kernel
    double wab;
    if(r>H)
    {
        double wqq1=2.0f-qq;
        double wqq2=wqq1*wqq1;

        wab=a2_4*(wqq2*wqq1);
    }
    else
    {
        double wqq2=qq*qq;
        double wqq3=wqq2*qq;

        wab=a2*(1.0f-1.5f*wqq2+0.75f*wqq3);
    }

    //-Tensile correction.
    double fab=wab*W_dap;
    fab*=fab; fab*=fab; //fab=fab^4
    const double tensilp1=(prs1/(rhoa*rhoa))*(prs1>0? 0.01: -0.2);
    const double tensilp2=(prs2/(rhob*rhob))*(prs2>0? 0.01: -0.2);

    return (fab*(tensilp1+tensilp2));
}

inline double Pi(const Point<3,double> & dr, double rr2, Point<3,double> & dv, double rhoa, double rhob, double massb, double & visc)
{
    const double dot = dr.get(0)*dv.get(0) + dr.get(1)*dv.get(1) + dr.get(2)*dv.get(2);
    const double dot_rr2 = dot/(rr2+Eta2);
    visc=std::max(dot_rr2,visc);

    if(dot < 0)
    {
        const float amubar=H*dot_rr2;
        const float robar=(rhoa+rhob)*0.5f;
        const float pi_visc=(-visco*cbar*amubar/robar);

        return pi_visc;
    }
    else
        return 0.0;
}

template<typename CellList> inline double calc_forces(particles & vd, CellList & NN, double & max_visc)
{
    auto part = vd.getDomainIterator();
    double visc = 0;

    // Update the cell-list
    vd.updateCellList(NN);

    // For each particle ...
    while (part.isNext())
    {
        // ... a
        auto a = part.get();

        // Get the position xp of the particle
        Point<3,double> xa = vd.getPos(a);

        // Take the mass of the particle dependently if it is FLUID or BOUNDARY
        double massa = (vd.getProp<type>(a) == FLUID)?MassFluid:MassBound;

        // Get the density of the of the particle a
        double rhoa = vd.getProp<rho>(a);

        // Get the pressure of the particle a
        double Pa = vd.getProp<Pressure>(a);

        // Get the Velocity of the particle a
        Point<3,double> va = vd.getProp<velocity>(a);

        // Reset the force counter (- gravity on zeta direction)
        vd.template getProp<force>(a)[0] = 0.0;
        vd.template getProp<force>(a)[1] = 0.0;
        vd.template getProp<force>(a)[2] = -gravity;
        vd.template getProp<drho>(a) = 0.0;

        // We threat FLUID particle differently from BOUNDARY PARTICLES ...
        if (vd.getProp<type>(a) != FLUID)
        {
            // If it is a boundary particle calculate the delta rho based on equation 2
            // This require to run across the neighborhoods particles of a
            auto Np = NN.template getNNIterator<NO_CHECK>(NN.getCell(vd.getPos(a)));

            // For each neighborhood particle
            while (Np.isNext() == true)
            {
                // ... q
                auto b = Np.get();

                // Get the position xp of the particle
                Point<3,double> xb = vd.getPos(b);

                // if (p == q) skip this particle
                if (a.getKey() == b)    {++Np; continue;};

                // get the mass of the particle
                double massb = (vd.getProp<type>(b) == FLUID)?MassFluid:MassBound;

                // Get the velocity of the particle b
                Point<3,double> vb = vd.getProp<velocity>(b);

                // Get the pressure and density of particle b
                double Pb = vd.getProp<Pressure>(b);
                double rhob = vd.getProp<rho>(b);

                // Get the distance between p and q
                Point<3,double> dr = xa - xb;
                // take the norm of this vector
                double r2 = norm2(dr);

                // If the particles interact ...
                if (r2 < 4.0*H*H)
                {
                    // ... calculate delta rho
                    double r = sqrt(r2);

                    Point<3,double> dv = va - vb;

                    Point<3,double> DW;
                    DWab(dr,DW,r,false);

                    const double dot = dr.get(0)*dv.get(0) + dr.get(1)*dv.get(1) + dr.get(2)*dv.get(2);
                    const double dot_rr2 = dot/(r2+Eta2);
                    max_visc=std::max(dot_rr2,max_visc);

                    vd.getProp<drho>(a) += massb*(dv.get(0)*DW.get(0)+dv.get(1)*DW.get(1)+dv.get(2)*DW.get(2));
                }

                ++Np;
            }
        }
        else
        {
            // If it is a fluid particle calculate based on equation 1 and 2

            // Get an iterator over the neighborhood particles of p
            auto Np = NN.template getNNIterator<NO_CHECK>(NN.getCell(vd.getPos(a)));

            // For each neighborhood particle
            while (Np.isNext() == true)
            {
                // ... q
                auto b = Np.get();

                // Get the position xp of the particle
                Point<3,double> xb = vd.getPos(b);

                // if (p == q) skip this particle
                if (a.getKey() == b)    {++Np; continue;};

                double massb = (vd.getProp<type>(b) == FLUID)?MassFluid:MassBound;
                Point<3,double> vb = vd.getProp<velocity>(b);
                double Pb = vd.getProp<Pressure>(b);
                double rhob = vd.getProp<rho>(b);

                // Get the distance between p and q
                Point<3,double> dr = xa - xb;
                // take the norm of this vector
                double r2 = norm2(dr);

                // if they interact
                if (r2 < 4.0*H*H)
                {
                    double r = sqrt(r2);

                    Point<3,double> v_rel = va - vb;

                    Point<3,double> DW;
                    DWab(dr,DW,r,false);

                    double factor = - massb*((vd.getProp<Pressure>(a) + vd.getProp<Pressure>(b)) / (rhoa * rhob) + Tensile(r,rhoa,rhob,Pa,Pb) + Pi(dr,r2,v_rel,rhoa,rhob,massb,visc));

                    vd.getProp<force>(a)[0] += factor * DW.get(0);
                    vd.getProp<force>(a)[1] += factor * DW.get(1);
                    vd.getProp<force>(a)[2] += factor * DW.get(2);

                    vd.getProp<drho>(a) += massb*(v_rel.get(0)*DW.get(0)+v_rel.get(1)*DW.get(1)+v_rel.get(2)*DW.get(2));
                }

                ++Np;
            }
        }

        ++part;
    }
}

void max_acceleration_and_velocity(particles & vd, double & max_acc, double & max_vel)
{
    // Calculate the maximum acceleration
    auto part = vd.getDomainIterator();

    while (part.isNext())
    {
        auto a = part.get();

        Point<3,double> acc(vd.getProp<force>(a));
        double acc2 = norm2(acc);

        Point<3,double> vel(vd.getProp<velocity>(a));
        double vel2 = norm2(vel);

        if (vel2 >= max_vel)
            max_vel = vel2;

        if (acc2 >= max_acc)
            max_acc = acc2;

        ++part;
    }
    max_acc = sqrt(max_acc);
    max_vel = sqrt(max_vel);

    Vcluster & v_cl = create_vcluster();
    v_cl.max(max_acc);
    v_cl.max(max_vel);
    v_cl.execute();
}

double calc_deltaT(particles & vd, double ViscDtMax)
{
    double Maxacc = 0.0;
    double Maxvel = 0.0;
    max_acceleration_and_velocity(vd,Maxacc,Maxvel);

    //-dt1 depends on force per unit mass.
    const double dt_f = (Maxacc)?sqrt(H/Maxacc):std::numeric_limits<int>::max();

    //-dt2 combines the Courant and the viscous time-step controls.
    const double dt_cv = H/(std::max(cbar,Maxvel*10.) + H*ViscDtMax);

    //-dt new value of time step.
    double dt=double(CFLnumber)*std::min(dt_f,dt_cv);
    if(dt<double(DtMin))
        dt=double(DtMin);

    return dt;
}

openfpm::vector<size_t> to_remove;

size_t cnt = 0;

void verlet_int(particles & vd, double dt)
{
    // list of the particle to remove
    to_remove.clear();

    // particle iterator
    auto part = vd.getDomainIterator();

    double dt205 = dt*dt*0.5;
    double dt2 = dt*2.0;

    // For each particle ...
    while (part.isNext())
    {
        // ... a
        auto a = part.get();

        // if the particle is boundary
        if (vd.template getProp<type>(a) == BOUNDARY)
        {
            // Update rho
            double rhop = vd.template getProp<rho>(a);

            // Update only the density
            vd.template getProp<velocity>(a)[0] = 0.0;
            vd.template getProp<velocity>(a)[1] = 0.0;
            vd.template getProp<velocity>(a)[2] = 0.0;
            vd.template getProp<rho>(a) = vd.template getProp<rho_prev>(a) + dt2*vd.template getProp<drho>(a);

            vd.template getProp<rho_prev>(a) = rhop;

            ++part;
            continue;
        }

        //-Calculate displacement and update position / Calcula desplazamiento y actualiza posicion.
        double dx = vd.template getProp<velocity>(a)[0]*dt + vd.template getProp<force>(a)[0]*dt205;
        double dy = vd.template getProp<velocity>(a)[1]*dt + vd.template getProp<force>(a)[1]*dt205;
        double dz = vd.template getProp<velocity>(a)[2]*dt + vd.template getProp<force>(a)[2]*dt205;

        vd.getPos(a)[0] += dx;
        vd.getPos(a)[1] += dy;
        vd.getPos(a)[2] += dz;

        double velX = vd.template getProp<velocity>(a)[0];
        double velY = vd.template getProp<velocity>(a)[1];
        double velZ = vd.template getProp<velocity>(a)[2];
        double rhop = vd.template getProp<rho>(a);

        vd.template getProp<velocity>(a)[0] = vd.template getProp<velocity_prev>(a)[0] + vd.template getProp<force>(a)[0]*dt2;
        vd.template getProp<velocity>(a)[1] = vd.template getProp<velocity_prev>(a)[1] + vd.template getProp<force>(a)[1]*dt2;
        vd.template getProp<velocity>(a)[2] = vd.template getProp<velocity_prev>(a)[2] + vd.template getProp<force>(a)[2]*dt2;
        vd.template getProp<rho>(a) = vd.template getProp<rho_prev>(a) + dt2*vd.template getProp<drho>(a);

        // Check if the particle go out of range in space and in density
        if (vd.getPos(a)[0] <  0.000263878 || vd.getPos(a)[1] < 0.000263878 || vd.getPos(a)[2] < 0.000263878 ||
            vd.getPos(a)[0] >  0.000263878+1.59947 || vd.getPos(a)[1] > 0.000263878+0.672972 || vd.getPos(a)[2] > 0.000263878+0.903944 ||
            vd.template getProp<rho>(a) < RhoMin || vd.template getProp<rho>(a) > RhoMax)
        {
                       to_remove.add(a.getKey());
        }

        vd.template getProp<velocity_prev>(a)[0] = velX;
        vd.template getProp<velocity_prev>(a)[1] = velY;
        vd.template getProp<velocity_prev>(a)[2] = velZ;
        vd.template getProp<rho_prev>(a) = rhop;

        ++part;
    }

    // remove the particles
    vd.remove(to_remove,0);

    // increment the iteration counter
    cnt++;
}

void euler_int(particles & vd, double dt)
{
    // list of the particle to remove
    to_remove.clear();

    // particle iterator
    auto part = vd.getDomainIterator();

    double dt205 = dt*dt*0.5;
    double dt2 = dt*2.0;

    // For each particle ...
    while (part.isNext())
    {
        // ... a
        auto a = part.get();

        // if the particle is boundary
        if (vd.template getProp<type>(a) == BOUNDARY)
        {
            // Update rho
            double rhop = vd.template getProp<rho>(a);

            // Update only the density
            vd.template getProp<velocity>(a)[0] = 0.0;
            vd.template getProp<velocity>(a)[1] = 0.0;
            vd.template getProp<velocity>(a)[2] = 0.0;
            vd.template getProp<rho>(a) = vd.template getProp<rho>(a) + dt*vd.template getProp<drho>(a);

            vd.template getProp<rho_prev>(a) = rhop;

            ++part;
            continue;
        }

        //-Calculate displacement and update position / Calcula desplazamiento y actualiza posicion.
        double dx = vd.template getProp<velocity>(a)[0]*dt + vd.template getProp<force>(a)[0]*dt205;
        double dy = vd.template getProp<velocity>(a)[1]*dt + vd.template getProp<force>(a)[1]*dt205;
        double dz = vd.template getProp<velocity>(a)[2]*dt + vd.template getProp<force>(a)[2]*dt205;

        vd.getPos(a)[0] += dx;
        vd.getPos(a)[1] += dy;
        vd.getPos(a)[2] += dz;

        double velX = vd.template getProp<velocity>(a)[0];
        double velY = vd.template getProp<velocity>(a)[1];
        double velZ = vd.template getProp<velocity>(a)[2];
        double rhop = vd.template getProp<rho>(a);

        vd.template getProp<velocity>(a)[0] = vd.template getProp<velocity>(a)[0] + vd.template getProp<force>(a)[0]*dt;
        vd.template getProp<velocity>(a)[1] = vd.template getProp<velocity>(a)[1] + vd.template getProp<force>(a)[1]*dt;
        vd.template getProp<velocity>(a)[2] = vd.template getProp<velocity>(a)[2] + vd.template getProp<force>(a)[2]*dt;
        vd.template getProp<rho>(a) = vd.template getProp<rho>(a) + dt*vd.template getProp<drho>(a);

        // Check if the particle go out of range in space and in density
        if (vd.getPos(a)[0] <  0.000263878 || vd.getPos(a)[1] < 0.000263878 || vd.getPos(a)[2] < 0.000263878 ||
            vd.getPos(a)[0] >  0.000263878+1.59947 || vd.getPos(a)[1] > 0.000263878+0.672972 || vd.getPos(a)[2] > 0.000263878+0.903944 ||
            vd.template getProp<rho>(a) < RhoMin || vd.template getProp<rho>(a) > RhoMax)
        {
                       to_remove.add(a.getKey());
        }

        vd.template getProp<velocity_prev>(a)[0] = velX;
        vd.template getProp<velocity_prev>(a)[1] = velY;
        vd.template getProp<velocity_prev>(a)[2] = velZ;
        vd.template getProp<rho_prev>(a) = rhop;

        ++part;
    }

    // remove the particles
    vd.remove(to_remove,0);

    // increment the iteration counter
    cnt++;
}

template<typename Vector, typename CellList>
inline void sensor_pressure(Vector & vd,
                            CellList & NN,
                            openfpm::vector<openfpm::vector<double>> & press_t,
                            openfpm::vector<Point<3,double>> & probes)
{
    Vcluster & v_cl = create_vcluster();

    press_t.add();

    for (size_t i = 0 ; i < probes.size() ; i++)
    {
        float press_tmp = 0.0f;
        float tot_ker = 0.0;

        // if the probe is inside the processor domain
        if (vd.getDecomposition().isLocal(probes.get(i)) == true)
        {
            // Get the position of the probe i
            Point<3,double> xp = probes.get(i);

            // get the iterator over the neighbohood particles of the probes position
            auto itg = NN.template getNNIterator<NO_CHECK>(NN.getCell(probes.get(i)));
            while (itg.isNext())
            {
                auto q = itg.get();

                // Only the fluid particles are importants
                if (vd.template getProp<type>(q) != FLUID)
                {
                    ++itg;
                    continue;
                }

                // Get the position of the neighborhood particle q
                Point<3,double> xq = vd.template getPos(q);

                // Calculate the contribution of the particle to the pressure
                // of the probe
                double r = sqrt(norm2(xp - xq));

                double ker = Wab(r) * (MassFluid / rho_zero);

                // Also keep track of the calculation of the summed
                // kernel
                tot_ker += ker;

                // Add the total pressure contribution
                press_tmp += vd.template getProp<Pressure>(q) * ker;

                // next neighborhood particle
                ++itg;
            }

            // We calculate the pressure normalizing the
            // sum over all kernels
            if (tot_ker == 0.0)
                press_tmp = 0.0;
            else
                press_tmp = 1.0 / tot_ker * press_tmp;

        }

        // This is not necessary in principle, but if you
        // want to make all processor aware of the history of the calculated
        // pressure we have to execute this
        v_cl.sum(press_tmp);
        v_cl.execute();

        // We add the calculated pressure into the history
        press_t.last().add(press_tmp);
    }
}

int main(int argc, char* argv[])
{

    // initialize the library
    openfpm_init(&argc,&argv);

    // It contain for each time-step the value detected by the probes
    openfpm::vector<openfpm::vector<double>> press_t;
    openfpm::vector<Point<3,double>> probes;

    probes.add({0.8779,0.3,0.02});
    probes.add({0.754,0.31,0.02});

    // Here we define our domain a 2D box with internals from 0 to 1.0 for x and y
    Box<3,double> domain({-0.05,-0.05,-0.05},{1.7010,0.7065,0.5025});
    size_t sz[3] = {207,90,66};

    // Fill W_dap
    W_dap = 1.0/Wab(H/1.5);

    // Here we define the boundary conditions of our problem
    size_t bc[3]={NON_PERIODIC,NON_PERIODIC,NON_PERIODIC};

    // extended boundary around the domain, and the processor domain
    Ghost<3,double> g(2*H);
    


    particles vd(0,domain,bc,g,DEC_GRAN(512));



    // You can ignore all these dp/2.0 is a trick to reach the same initialization
    // of Dual-SPH that use a different criteria to draw particles
    Box<3,double> fluid_box({dp/2.0,dp/2.0,dp/2.0},{0.4+dp/2.0,0.67-dp/2.0,0.3+dp/2.0});

    // return an iterator to the fluid particles to add to vd
    auto fluid_it = DrawParticles::DrawBox(vd,sz,domain,fluid_box);

    // here we fill some of the constants needed by the simulation
    max_fluid_height = fluid_it.getBoxMargins().getHigh(2);
    h_swl = fluid_it.getBoxMargins().getHigh(2) - fluid_it.getBoxMargins().getLow(2);
    B = (coeff_sound)*(coeff_sound)*gravity*h_swl*rho_zero / gamma_;
    cbar = coeff_sound * sqrt(gravity * h_swl);

    // for each particle inside the fluid box ...
    while (fluid_it.isNext())
    {
        // ... add a particle ...
        vd.add();

        // ... and set it position ...
        vd.getLastPos()[0] = fluid_it.get().get(0);
        vd.getLastPos()[1] = fluid_it.get().get(1);
        vd.getLastPos()[2] = fluid_it.get().get(2);

        // and its type.
        vd.template getLastProp<type>() = FLUID;

        // We also initialize the density of the particle and the hydro-static pressure given by
        //
        // rho_zero*g*h = P
        //
        // rho_p = (P/B + 1)^(1/Gamma) * rho_zero
        //

        vd.template getLastProp<Pressure>() = rho_zero * gravity *  (max_fluid_height - fluid_it.get().get(2));

        vd.template getLastProp<rho>() = pow(vd.template getLastProp<Pressure>() / B + 1, 1.0/gamma_) * rho_zero;
        vd.template getLastProp<rho_prev>() = vd.template getLastProp<rho>();
        vd.template getLastProp<velocity>()[0] = 0.0;
        vd.template getLastProp<velocity>()[1] = 0.0;
        vd.template getLastProp<velocity>()[2] = 0.0;

        vd.template getLastProp<velocity_prev>()[0] = 0.0;
        vd.template getLastProp<velocity_prev>()[1] = 0.0;
        vd.template getLastProp<velocity_prev>()[2] = 0.0;

        // next fluid particle
        ++fluid_it;
    }



    // Recipient
    Box<3,double> recipient1({0.0,0.0,0.0},{1.6+dp/2.0,0.67+dp/2.0,0.4+dp/2.0});
    Box<3,double> recipient2({dp,dp,dp},{1.6-dp/2.0,0.67-dp/2.0,0.4+dp/2.0});

    Box<3,double> obstacle1({0.9,0.24-dp/2.0,0.0},{1.02+dp/2.0,0.36,0.45+dp/2.0});
    Box<3,double> obstacle2({0.9+dp,0.24+dp/2.0,0.0},{1.02-dp/2.0,0.36-dp,0.45-dp/2.0});
    Box<3,double> obstacle3({0.9+dp,0.24,0.0},{1.02,0.36,0.45});

    openfpm::vector<Box<3,double>> holes;
    holes.add(recipient2);
    holes.add(obstacle1);
    auto bound_box = DrawParticles::DrawSkin(vd,sz,domain,holes,recipient1);

    while (bound_box.isNext())
    {
        vd.add();

        vd.getLastPos()[0] = bound_box.get().get(0);
        vd.getLastPos()[1] = bound_box.get().get(1);
        vd.getLastPos()[2] = bound_box.get().get(2);

        vd.template getLastProp<type>() = BOUNDARY;
        vd.template getLastProp<rho>() = rho_zero;
        vd.template getLastProp<rho_prev>() = rho_zero;
        vd.template getLastProp<velocity>()[0] = 0.0;
        vd.template getLastProp<velocity>()[1] = 0.0;
        vd.template getLastProp<velocity>()[2] = 0.0;

        vd.template getLastProp<velocity_prev>()[0] = 0.0;
        vd.template getLastProp<velocity_prev>()[1] = 0.0;
        vd.template getLastProp<velocity_prev>()[2] = 0.0;

        ++bound_box;
    }



    auto obstacle_box = DrawParticles::DrawSkin(vd,sz,domain,obstacle2,obstacle1);

    while (obstacle_box.isNext())
    {
        vd.add();

        vd.getLastPos()[0] = obstacle_box.get().get(0);
        vd.getLastPos()[1] = obstacle_box.get().get(1);
        vd.getLastPos()[2] = obstacle_box.get().get(2);

        vd.template getLastProp<type>() = BOUNDARY;
        vd.template getLastProp<rho>() = rho_zero;
        vd.template getLastProp<rho_prev>() = rho_zero;
        vd.template getLastProp<velocity>()[0] = 0.0;
        vd.template getLastProp<velocity>()[1] = 0.0;
        vd.template getLastProp<velocity>()[2] = 0.0;

        vd.template getLastProp<velocity_prev>()[0] = 0.0;
        vd.template getLastProp<velocity_prev>()[1] = 0.0;
        vd.template getLastProp<velocity_prev>()[2] = 0.0;

        ++obstacle_box;
    }

    vd.map();



    // Now that we fill the vector with particles
    ModelCustom md;

    vd.addComputationCosts(md);
    vd.getDecomposition().decompose();
    vd.map();


    vd.ghost_get<type,rho,Pressure,velocity>();

    auto NN = vd.getCellList(2*H);

    // Evolve


    size_t write = 0;
    size_t it = 0;
    size_t it_reb = 0;
    double t = 0.0;
    while (t <= t_end)
    {
        Vcluster & v_cl = create_vcluster();
        timer it_time;

        it_reb++;
        if (it_reb == 200)
        {
            vd.map();

            it_reb = 0;
            ModelCustom md;
            vd.addComputationCosts(md);
            vd.getDecomposition().decompose();

            if (v_cl.getProcessUnitID() == 0)
                std::cout << "REBALANCED " << std::endl;
        }

        vd.map();

        // Calculate pressure from the density
        EqState(vd);

        double max_visc = 0.0;

        vd.ghost_get<type,rho,Pressure,velocity>();

        // Calc forces
        calc_forces(vd,NN,max_visc);

        // Get the maximum viscosity term across processors
        v_cl.max(max_visc);
        v_cl.execute();

        // Calculate delta t integration
        double dt = calc_deltaT(vd,max_visc);

        // VerletStep or euler step
        it++;
        if (it < 40)
            verlet_int(vd,dt);
        else
        {
            euler_int(vd,dt);
            it = 0;
        }

        t += dt;

        if (write < t*100)
        {
            // calculate the pressure at the sensor points
            sensor_pressure(vd,NN,press_t,probes);

            vd.write("Geometry",write);
            write++;

            if (v_cl.getProcessUnitID() == 0)
                std::cout << "TIME: " << t << "  write " << it_time.getwct() << "   " << v_cl.getProcessUnitID() << "   " << cnt << std::endl;
        }
        else
        {
            if (v_cl.getProcessUnitID() == 0)
                std::cout << "TIME: " << t << "  " << it_time.getwct() << "   " << v_cl.getProcessUnitID() << "   " << cnt << std::endl;
        }
    }



    openfpm_finalize();


}