InitGridWithPixel.hpp File Reference

Header file containing functions for loading pixel values from 2D image or 3D image stack (volume) stored in a binary file onto an openFPM grid. More...

#include <iostream>
#include <typeinfo>
#include <cmath>
#include <sys/stat.h>
#include "Vector/vector_dist.hpp"
#include "Grid/grid_dist_id.hpp"
#include "data_type/aggregate.hpp"
#include "Decomposition/CartDecomposition.hpp"
#include "level_set/redistancing_Sussman/HelpFunctionsForGrid.hpp"

Go to the source code of this file.

Typedefs
typedef signed char	BYTE

Functions
bool	exists_test (const std::string &name)
std::vector< int >	get_size (const std::string &path_to_file)
	Read the number of pixels per dimension from a csv-file in order to create a grid with the same size.
template<size_t Phi_0, typename grid_type >
void	load_pixel_onto_grid (grid_type &grid, std::string file_name, std::vector< int > &stack_dims)
	Converts the pixel values stored in a binary file into doubles and loads them onto an OpenFPM grid.

Detailed Description

Header file containing functions for loading pixel values from 2D image or 3D image stack (volume) stored in a binary file onto an openFPM grid.

Can be run in parallel.

Author

Justina Stark & Pietro Incardona

Date

November 2019 - August 2020

Definition in file InitGridWithPixel.hpp.

Typedef Documentation

BYTE

typedef signed char BYTE

Definition at line 29 of file InitGridWithPixel.hpp.

Function Documentation

exists_test()

bool exists_test ( const std::string &  name )

inline

Definition at line 31 of file InitGridWithPixel.hpp.

get_size()

std::vector< int > get_size

(

const std::string &

path_to_file

)

Read the number of pixels per dimension from a csv-file in order to create a grid with the same size.

Parameters

path_to_file

Std::string containing the path to the csv file that holds the image/volume size in pixels per dimension.

Returns

Std::vector containing the count of pixels for each dimension as it was read from the csv file.

Definition at line 44 of file InitGridWithPixel.hpp.

load_pixel_onto_grid()

template<size_t Phi_0, typename grid_type >

void load_pixel_onto_grid	(	grid_type &	grid,
		std::string	file_name,
		std::vector< int > &	stack_dims
	)

Converts the pixel values stored in a binary file into doubles and loads them onto an OpenFPM grid.

Template Parameters

Phi_0	Index of property in which pixel value should be stored.
grid_type	Type of OpenFPM grid.

Parameters

grid	Grid of type grid_type, on which image / image-stack should be loaded.
file_name	Std::string containing the path + name of the binary file that stores the pixel values.
stack_dims	Size_t variable that contains the dimensionality of the image / image stack. Can be given manually or loaded from a csv file before (see: get_size())

Definition at line 92 of file InitGridWithPixel.hpp.